SPECTRUS-evo Webserver

This web server performs a decomposition of a protein sequence into evolutionarily-related domains, based on the analysis of coevolutionary couplings between pairs of amino acid positions in a multiple sequence alignment. A detailed description of the algorithm is provided in Granata D, Ponzoni L, Micheletti C, Carnevale V, "From Sequence to Function: Coevolving Amino Acids Encode Structural and Functional Domains" , bioRxiv 109397; doi: https://doi.org/10.1101/109397.

Upload a file containing the statistical couplings between residues: ⓘ AKE-couplings.dat ⓘ
Reference PDB structure (optional): ⓘ
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Parameters:

Minimum number of domains:
Maximum number of domains:
Iterations of the k-medoids algorithm:
Nearest neighbors number:
Sequence connectivity: ⓘ
Similarity matrix preprocessing: ⓘ